PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029604
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 271aa    MW: 28357.3 Da    PI: 8.6998
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029604genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-0685971527
                 -TTTTT-SS-SSS CS
      zf-CCCH 15 CkyGdrCkFaHgp 27
                 Ck+Gd+C+FaH++
  DCAR_029604 85 CKFGDKCRFAHSE 97
                 ***********95 PP

2zf-CCCH32.11.9e-10237261126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+ C +f + G C +GdrC+FaHg
  DCAR_029604 237 FKTKVCENFTK-GSCTFGDRCHFAHG 261
                  69*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.3291239IPR000571Zinc finger, CCCH-type
PfamPF146082.12436No hitNo description
Gene3DG3DSA:4.10.1000.101.2E-1169101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-770100IPR000571Zinc finger, CCCH-type
SMARTSM003560.177097IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2677098IPR000571Zinc finger, CCCH-type
PfamPF146080.0458595No hitNo description
SuperFamilySSF547914.68E-14136212IPR004088K Homology domain, type 1
SMARTSM003224.9E-11141211IPR004087K Homology domain
PROSITE profilePS5008413.586142206IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.9E-14142210IPR004088K Homology domain, type 1
CDDcd001053.15E-13144206No hitNo description
PfamPF000133.7E-10144208IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.107.6E-17231267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-9235267IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7236262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.586236263IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-8237261IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MPVPQYARSC SEYPSGLVPG NFTSGCQFGE GCHFLHYVPG GFSALGQMGN MGPGARKPAP  60
PTYADGPAPA IKTKLCNQIN TPEGCKFGDK CRFAHSEMEL GRPGLSAYED PRAMRAPMGG  120
AYGGRVDPSP PGLAAAANFG ASATAKISID ASLAGAVIGK GGVNSKQICR MTGVKFAIRD  180
HDTDPNQKNV ELEGNFDQIK DASGMVRELI MRIGASARGP VRTPMAMPGQ APPASNFKTK  240
VCENFTKGSC TFGDRCHFAH GAEELRKTAI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767111.11e-110PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_016439759.11e-110PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R08e-91C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A068VA911e-110A0A068VA91_COFCA; Uncharacterized protein
STRINGVIT_08s0007g06400.t011e-107(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-60C3H family protein